Saturday, 3rd February 23rd Annual Lorne Proteomics Symposium 2018

• Ruedi Aebersold (ETH Zurich, Switzerland)
  "SWATH-MS: Principles and present state"

• Identifying regulators of O-GlcNAcylation during injury - Natasha Zachara
• High-throughput phosphoproteomics: technologies and applications in systems biology - Sean J Humphrey
• Trans-splicing of class I HLA bound peptides diversifies the immunopeptidome - Pouya Faridi
• Quantitative N-Terminomics and Phosphoproteomics reveal distinct signalling networks governing regulated necrosis of neurons in excitotoxicity - Heung-Chin Cheng

• A Genetic Dissection Approach to Functional Glycomics - Henrik Clausen
• From genome to glycome: Automated analytical workflows to align glycomics with other data to gain insight into complex biological systems - Pauline Rudd
• Identification of the plant Golgi localized UDP-GlcNAc transporter and its role in endomembrane lipid and protein glycosylation - Joshua Heazlewood
• Detailed glycomics and glycoenzyme transcriptomics of amyotrophic lateral sclerosis blood-derived monocytes - Hannes Hinneburg
• SWATH analysis of human plasma glycopeptides without predefined glycan compositional knowledge - Chi-Hung Lin

• MALDI mass spectrometry imaging of multicellular tumour spheroids: an improved platform for testing novel anti cancer compounds - Mitchell MA Acland
• Quantitative proteomics of cysteine redox post-translational modifications in myocardial ischemia / reperfusion (I/R) using parallel reaction monitoring mass spectrometry - Alexander W Rookyard
• Comprehensive Identification of Crosslinked Peptides using a Multi-crosslinker, Fragmentation and Data analysis Approach   - Daniela-Lee Smith
• Mass spectrometry based interrogation of the IMiD dependent zinc-finger degron landscape - Katherine A Donovan
• Proteomics investigations reveal molecular similarities and differences between human and rat retinas under glaucoma conditions. - Mehdi Mirzaei

• MALDI mass spectrometry imaging of multicellular tumour spheroids: an improved platform for testing novel anti cancer compounds - Mitchell MA Acland
• Quantitative proteomics of cysteine redox post-translational modifications in myocardial ischemia / reperfusion (I/R) using parallel reaction monitoring mass spectrometry - Alexander W Rookyard
• Comprehensive Identification of Crosslinked Peptides using a Multi-crosslinker, Fragmentation and Data analysis Approach   - Daniela-Lee Smith
• ­­Mass spectrometry based interrogation of the IMiD dependent zinc-finger degron landscape - Katherine A Donovan
• Proteomics investigations reveal molecular similarities and differences between human and rat retinas under glaucoma conditions. - Mehdi Mirzaei
• An investigation into MALDI imaging sample preparation compared to DESI imaging for multimodal MSI in Pre-clinical Breast Cancer Research - Heather Patsiouras
• Temporal quantitative profiling of ΦX174 and host-cell proteomes during lytic infection - Bradley W Wright
• Backwards and forwards in time: Urinary proteomics of anterior cruciate ligament injury - Yee L Chng
• ERK1/2 is a key regulator of early myocardial ischemic damage - Desmond K Li
• T-cadherin: A potential biomarker for healthy adipose tissue - Simon Göddeke
• Displacement chromatography within online 2D-LC-MS is improving identification of proteins from low microgram amounts  - Hartmut Schlueter
• SWATH-MS spectral reference library species conversion with the R package ‘dialects’ - Madeleine J Otway
• Proteomics exploration in skeletal muscle following physical trauma - Lian Liu
• Proteomics of the uterus of lactating dairy cows and its effect on fertility - Nicolas Aranciaga
• MethylQuant: a tool for sensitive validation of enzyme-mediated protein methylation sites from heavy-methyl SILAC data - Gene Hart-Smith
• Optimising the number of Variable SWATH Windows - Dylan Xavier
• Comparison of Different Correlation Metrics for Protein Correlation Profiling of Yeast Protein Complexes - Chi Nam Ignatius Pang
• Proteomics analysis of specific brain regions from Alzheimer's disease model mice at the early stage of disease pathology - Liting Deng
• Non-protein amino acids and neurological disease: their detection in human proteins and effects - Joel R Steele
• Identification of a kynurenine-modified HIV epitope using immunopeptidomics - Sri H Ramarathinam
• SP3-DIA on a Q-Exactive HF enables high-throughput and miniaturised screening of cardiac organoids - Benjamin L Parker
• Identification of T cell epitopes involved in adverse reactions to β-lactam antibiotics - Patricia Illing
• Optimizing red blood cell protein extraction for proteomic analysis - Stephan Klatt
• Optimising protein extraction for the study of the alpha-amylase trypsin inhibitors, the proteinaceous components implicated in non-coeliac gluten sensitivity. - Utpal Bose
• Proteomic characterisation of stemness in rat bone marrow-derived mesenchymal stem cells - Morgan Carlton
• SWATH analysis using external spectral libraries: Evaluation of cross-instrument data for library construction and quantitation - Xiaomin Song
• Integrated degradomics in differentiated macrophages - Nestor Solis
• Comparative Proteomic analysis using TMT-based MS Reveals New Insight between Different Growth Phase of Biofilms from S. aureus - Md Arifur Rahman
• Unbiased Analysis of Liver Protein Complexes During the Fasting Response - Mark Larance
• Deciphering the Pathways of Neuronal Excitotoxic Death by N-terminomics Analysis - Syeda Sadia Ameen
• An optimised size exclusion chromatography method enables analysis of the extracellular vesicle proteome from complex samples  - Rebecca E Lane
• Next generation clinical veterinary proteomics - Pawel Sadowski
• Modelling multiple sclerosis: proteomic characterisation of adipose stem cells - Naomi Koh Belic
• Novel capillary-flow LC HRAM MS platform for fast targeted analysis and robust profiling of complex samples - Steve Binos
• Characterisation of duck egg lysozyme isoforms by mass spectrometry - Ben Crossett
• Spatial targeted metabolomics mapping in rat brain sections using DESI ion mobility mass spectrometry - Jose Castro-Perez
• A multiplexed lipidomics study of the adaptive response of prostate cancer cells to androgen-targeted therapy - Rajesh Gupta
• Absolute quantitation of iron binding proteins as therapeutic targets in neurodegeneration - Amy L Heffernan
• Robust reproducible LC/MS based metabolomic profiling of large cohort human studies using validated high throughput targeted and discovery assays - Robert s Plumb
• Generation of rat organ SWATH-MS proteomic models for human cancer samples - Dylan Xavier
• Trapped ion mobility spectrometry with parallel accumulation serial fragmentation (PASEF): the new standard for shotgun proteomics - Adam Rainczuk
• 2D-precursor selection for trapped ion mobility with parallel accumulation serial fragmentation (PASEF) - Oliver Raether
• Quantitative analysis of differential protein distribution in brain regions using PCT-SWATH-MS - Jonas Albinus
• Using quantitative proteomics to aid the diagnosis of mitochondrial disease and characterise novel disease genes. - David A Stroud
• Quantitative characterisation of burn blister fluid using SWATH to aid clinical diagnosis - Tuo Zang
• Complete multi-omic physiological characterisation of clonal Pseudomonas aeruginosa adaptation to the CF lung - William Klare
• Analysis of the cardiac ubiquitinome in a rat model of type II diabetes mellitus - Shivanjali J Lingam
• A web-based quality control tool for the bench marking of proteomic LC-MS systems - Rui(Irene) Chen
• Multi-Organ Proteomics Analysis of a Rodent Model of Type 2 Diabetes Mellitus - Melanie White
• The Power of Multiplexing - Combining TMT discovery and targeted label free quantitation for biomarker analysis - Aaron Robitaille
• Single amino acid resolution of glycosites with top-down UVPD of glycoproteins - Daniel Lopez-Ferrer
• In-Depth Characterization Of Intact Protein Standards Using Top Down Mass Spectrometry With Multiple MSMS Strategies - Scott Peterman

• Jesper Olsen (Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark)
  "Fast, sensitive and quantitative phosphoproteomics on for large-scale cell perturbation analysis"

• An Integrated ‘Omics’ Approach toward Understanding the Role of Aberrant Lipid Metabolism in Colon Cancer - Gavin E Reid
• Understanding how proteome foldedness changes under proteostasis stress - Dezerae Cox
• Integrated proteomics and lipidomics profiling of plasma cells in multiple myeloma patients: A pilot study - Ahmed Mohamed
• Metabolomics-based investigation of the mechanism of action of novel bis-triazine antimalarials reveals perturbation of arginine methylation - Darren J Creek

• Application of quantitative proteomics to' leaky-gut' and intestinal barrier dysfunction - shifting landscapes in the understanding of IBD pathophysiology - Valerie Wasinger
• Exosomes and implantation - new insights into endometrial-embryo interaction - David Greening
• Multiplex targeted proteomics assay for single-shot flavivirus diagnosis - Jayantha Gunaratne
• Proteomic profiling of predictive biomarkers for hypoxia-activated prodrugs in head & neck squamous cell carcinomas - Yongchuan Gu

Attendees of the “Students of APS (SoAPS) Dinner with Invited Speakers” are welcomed to join the Trivia night running at the Cumberland Lorne (Horizons Room – L3) from 9:30pm.