Friday, 2nd February 23rd Annual Lorne Proteomics Symposium 2018

• Pauline Rudd (NIBRT, Ireland and Bioprocessing Technology Institute, A*STAR, Singapore)
  “Automated LC/MS/bioinformatics based platforms for exploring glycosylation in diagnostics, precision medicine and pathways to disease” 
  
  
• Robert Trengove (Separation Science & Metabolomics Laboratory, Murdoch University, Perth, Australia)
  "Hepcidin isoform measurement: a diagnosis tool?"

• Robert Plumb (Waters Corporation, Milford, United States)
  "Rapid robust reproducible LC/MS based metabolomic phenotyping of large cohort pidemiological studies"

• N-terminomic dissection of linear ubiquitination and NFkB signalling: Rescuing MALT1 paracaspase immunodeficiency by an allosteric inhibitor - Chris Overall
• nUPLC-MS² profiling of class I immunopeptidomes of HLA-A2-positive breast cancer patients prioritises antigen selection for tumour-specific immunotherapy - Nicola Ternette
• Novel insights in neurodegenerative diseases using advanced imaging, biofluid analysis and microproteomics - Allan Stensballe
• Tissue specific secretomes, the hidden treasure for identification of disease related marker proteins - Stefan Lehr

• Extracting the most out of your multi-omics data - Jean Yang
• Bioinformatics aspects of DIA/SWATH with large extended libraries - Dana Pascovici
• Thesaurus: quantifying phosphopeptide positional isomers in DIA experiments - Brian Searle
• Working with non-model organisms: an integrated omics workflow for effective assembly of species-specific protein landscapes - Eugene A Kapp
• Galaxy-P: an accessible resource for multi-omics analysis   - Maria A Doyle

• Pathogenesis of celiac disease: Identification of isopeptides by LC-MS/MS - Barbara Lexhaller 
• Proteomic analysis of 4-phenylbutyrate treated HepG2 cells stably expressing ATP-binding cassette transporter A1 (ABCA1) mutants - Jawaria Munir 
• Investigating the substrate recognition motifs of Hmt1 and PRMT1 - Ryan J Separovich 
• A DIA-based phosphoproteomic study of signalling transduction via the chemokine receptor CCR2 - Cheng Huang 
• Using MALDI-IMS to explore the distribution of peptides in Australian sea anemones: Oulactis spp - Michela L Mitchell 

Proteomics 2018 & Glycoscience Symposium posters will be displayed together.
The Glycoscience Symposium posters are listed in the session below titled "Glycoscience Symposium - Lunch & Poster Session One".

• Pathogenesis of celiac disease: Identification of isopeptides by LC-MS/MS - Barbara Lexhaller
• Proteomic analysis of 4-phenylbutyrate treated HepG2 cells stably expressing ATP-binding cassette transporter A1 (ABCA1) mutants - Jawaria Munir
• Investigating the substrate recognition motifs of Hmt1 and PRMT1 - Ryan J Separovich
• A DIA-based Phosphoproteomic Study of Signalling Transduction via the Chemokine Receptor CCR2 - Cheng Huang
• Using MALDI-IMS to explore the distribution of peptides in Australian sea anemones: Oulactis spp. - Michela L Mitchell
• Applying proteomics to deliver superior and safe plant-based food products - Keren Byrne
• Analysis of phenotypic variation in canine plasma metabolites - Pamela Soh
• Discovery and characterisation of a novel human lysine methyltransferase by CRISPR/Cas9 knock out and SILAC proteomics - Joshua J Hamey
• Bioinformatics analysis of DIA based mass spectrometry data to quantify the protein expression - Zainab Noor
• Phosphoproteomic screening of exercise mimetics reveals drug interactions and identifies PAK2 as a regulator of glucose metabolism - Elise J. Needham
• Sampling ovarian cancer for proteomic analysis  - Maiken L M Espersen
• The good (beer), the bad (hydrolysis) and the evil (gluten) - Using LC-MS to uncover the hidden gluten in craft beers. - Michelle L Colgrave
• Top-down proteomics investigation of age gelation mechanisms in genetically selected milks - Delphine Vincent
• A Novel Data Independent Acquisition Method for Hemoglobin Variant Identification in Clinical Research - Jose Castro-Perez
• Dietary supplementation of whole dried sugarcane (WDS) in a high fat diet mouse model modulates liver inflammatory pathways - Daniel Bucio Noble
• Detecting protein-protein crosslinks formed during food processing - Hannah McKerchar
• Charting the tumour suppressive signaling networks of CHK kinase in colorectal cancer cells with a novel tyrosine-specific phosphoproteomics approach - Andy Low
• The reduced protein methylation network in the early-branching protozoan parasite, Giardia duodenalis - Samantha Emery-Corbin
• Peptidomics and metabolomics reveal the role of cysteine, aspartic and metallo proteases in the haemoglobin digestion pathway of the malaria parasite. - Ghizal Siddiqui
• Mycoplasma pneumoniae presents proteolytically processed proteins on its cell surface - Iain J Berry
• Monitoring of yeast health using MALDI-TOF MS - Brooke A Dilmetz
• Lazyprot: a comprehensive software for the bioinformatic processing and pre-processing of proteomic data - Jeremy Potriquet
• Unravelling the connection between Salmonella and Ankylosing Spondylitis - Terry C.C Lim Kam Sian
• Towards the generation of a comprehensive proteome map for phytophthora cinnamomi, the causal agent of native dieback - Christina Andronis
• A Comparative Qualitative and Quantitative Assessment of SONAR for High-Throughput Proteomic Applications - Jose Castro-Perez
• Evaluating paper spray ionization and dried plasma spot analysis techniques for quantitation of the prostate cancer drug abiraterone - Atul Bhatnagar
• Bioarchaeological Proteomics: Development and application of Sample Preparation Methodology for Analysis of Ancient Egyptian Human Skin Samples - Prathiba Ravishankar
• Comparison of SDS-PAGE gel slice protein fractionation and reversed-phase spin column peptide fractionation for use in quantitative shotgun proteomics in a variety of biological systems - Sara Hamzelou
• PepWitch: a python module to facilitate FDR-corrected Benjamini–Hochberg t-tests by employing same/same analysis on label-free shotgun data. - David C.L. Handler
• Role of post translationally modified peptides in cancer - Kirti Pandey
• A blockage, a trickle or a deluge? TAP’ing into viral immune evasion - Nathan P Croft
• Label free and TMT proteomic analysis of leaf lamina and leaf growing zones in rice genotypes with contrasting drought tolerance - Yunqi Wu
• Characterisation of Biotherapeutics Using Native Ion Mobility Mass Spectrometry - Christopher Buck
• Consequences of genetic variation and associated proteomes in chronic venous leg ulceration - Elizabeth Sydes

• Oliver Raether (Bruker Daltonik GmbH, Bremen, Germany)
  "Trapped ion mobility mass spectrometry for improved sensitivity and fastest data dependent proteomics"

• Andrew Webb (Walter & Eliza Hall Institute of Medical Research, Melbourne, Australia)
  "Peptides to proteoforms: Maximising high resolution QTOF data"
  
  
• Paul Shan (Bioinformatics Solutions Inc., Waterloo, Canada)
  "In-depth proteomics analysis with PASEF technology by PEAKS"

• Identification of multiple plant peptide hormones in secreted peptidome using de novo sequencing sheds light on proteolytic processing and post-translational modifications - Michael A Djordjevic
• Bioarchaeological proteomics - Identification of proteins from skin and muscle tissue from Ancient Egyptian mummies shows evidence of acute inflammation and immune response - Paul A. Haynes
• Near complete mapping of brain neurotransmitters with mass spectrometry imaging directly in tissue sections - Per E Andren
• Physical activity elevates circulating levels of the neuroprotective LG3 peptide: a novel stroke therapy? - Tony J Parker
• Suppressing proliferation, invasion and non-canonical MAPK signaling by antagonizing the cancer cell surface-restricted uPAR·αvβ6 protein interaction - Mark S. S Baker
• A label-free quantitative proteomics assessment of osmotic stress responses in Candida albicans - Lee Gethings

Session sponsored by 

We acknowledge our invited Speaker supporters:

• Pauline Rudd supported by APS

• Glycosylation pathways associated with disease and personalised approaches to therapies - Pauline Rudd
• Advances in the Glycoanalytical Toolbox - Erdmann Rapp
• The role of protein glycosylation on the development of skeletal muscle - Benjamin L Parker
• Thermal Glycoproteome Profiling: the role of site-specific glycosylation in glycoprotein stability - Ben L Schulz
• Uncovering N-linked protein glycosylation changes during prostate cancer progression - Rebeca Sakuma

We acknowledge our Invited speaker supporters:

• Tony Bacic supported by Bioplatforms Australia
• Vincent Bulone supported by CSL
• Benjamin Bailly supported by Institute for Glycomics

• Plant glycoconjugate glycans are important in growth and development! - Tony Bacic
• Cell wall carbohydrate structure and biosynthesis in pathogenic oomycetes - Vincent Bulone
• Discovery and structure-based characterisation of new-generation influenza virus neuraminidase inhibitors - Benjamin Bailly
• Cell-line specific glycosylation of respiratory syncytial virus fusion protein and implications for vaccine design - Cassandra L Pegg
• Campylobacter jejuni infection modifies the human intestinal epithelial cell N-glycome - Zeynep Sumer-Bayraktar

• Human CD52 initiates its immunosuppressive activity via specific sialoforms  - Abdulrahman Shathili
• Glycosylation features of neutrophilic granules - Harry Tjondro
• Dual function of Ost3 proteins elucidated using glyco- and global proteomics - K Y Benjamin Yeo
• Characterising site-specific N-glycosylation facilitated by the oligosaccharyltransferase - Danila Elango 
• Carcinoembryonic antigen glycosylation – a highly underestimated cancer marker? - Andreia Almeida
• Taming the beast: Standardising porous graphitised carbon based LC-MS glycomics - Christopher Ashwood

Proteomics 2018 & Glycoscience Symposium posters will be displayed together.
The Proteomics 2018 posters are listed in the session above titled "Lunch & Poster Session One".

• Human CD52 initiates its immunosuppressive activity via specific sialoforms  - Abdulrahman Shathili
• Glycosylation features of neutrophilic granules - Harry Tjondro
• Dual function of Ost3 proteins elucidated using glyco- and global proteomics - K Y Benjamin Yeo
• Characterising site-specific N-glycosylation facilitated by the oligosaccharyltransferase - Danila Elango
• Carcinoembryonic antigen glycosylation – a highly underestimated cancer marker? - Andreia Almeida
• Taming the beast: Standardising porous graphitised carbon based LC-MS glycomics - Christopher Ashwood
• Selenomonas sputigena flagellin glycoproteomics reveals previously not described O-glycans and rhamnose fragment rearrangement occurring on the glycopeptides - Daniel Kolarich
• Determining the role of Campylobacter jejuni N-glycosylation in protein stability by N-terminomics - Joel Cain
• Automating the release of N- and O- glycans from glycoproteins       - Liisa Kautto
• Inflammation induces Polysialic Acid in the Brain - Sameera Iqbal
• Enrichment of lowly-hydrophilic truncated N-glycopeptides using IP-HILIC-SPE - Morten Thaysen-Andersen
• Probing synaptic N-glycome fluctuations in circadian rhythm - Edward S.X. Moh
• Enhancement of effects of salmon nasal cartilage proteoglycan on biological function by its modification. - Masahiro Sano
• Site specific conjugation of europium chelate to the glycans of monoclonal antibodies: Application for highly sensitive time-gated luminescence detection of Prostate Cancer Cells - Nima Sayyadi
• Mapping protein paucimannosylation across human cancers - Sayantani Chatterjee

We acknowledge our Invited speaker supporters:

• Richard Payne supported by CSL
• Emily Parker supported by ANZGG

• Modifications Matter: Probing the Effects of Glycosylation on Peptide and Protein Activity   - Richard Payne
• Twisting tails and curious channels – the phosphoribosyltransferases - Emily Parker
• Analytical Strategies for Glycan Characterisation of Biotherapeutics - Matthias Pelzing
• MALDI mass spectrometry imaging of early- and late-stage serous ovarian cancer tissue reveals stage-specific N-glycans - Matthew Briggs
• Synthetic glycopeptides: versatile tools for glycoproteomics - Kathirvel Alagesan
• GlycoStore: a resource for the exploration and annotation of liquid chromatography and capillary electrophoresis glycan data - Matthew P Campbell

We acknowledge our Invited speaker supporters:

• Natasha Zachara supported by APS
• Helen Blanchard supported by Institute for Glycomics
• Henrik Clausen supported by APS

• Tuning OGT and OGA expression reveals a role for dynamic O-GlcNAcylation in regulating AMPK signaling and autophagy - Natasha Zachara
• Design of compounds to block galectin carbohydrate-recognition: In pursuit of eliminating cancer progression - Helen Blanchard
• Glycolipid biosynthesis modulates protein glycosylation in ovarian cancer cells - Arun Everest-Dass
• Glycosphingolipids trigger reversible transition of mesenchymal and epithelial ovarian cancer cells - Francis Jacob
• Protein glycosylation features of metastatic melanoma: the search for prognostic markers - Jodie L Abrahams
• Whoa man! Unexpected protein O-mannosylation pathways - Henrik Clausen